Detailed information of SNP:
|
SNP ID:
sf1002114190(Gbrowse)
Chromosome: chr10 Position: 2114190 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 98.99% | 1.01% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 460 | 97.39% | 2.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 75 | 84.00% | 16.00% |
| Japonica Intermediate | 56 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002114190 | G->C | INTERGENIC | None |