Detailed information of SNP:
|
SNP ID:
sf1002136478(Gbrowse)
Chromosome: chr10 Position: 2136478 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 68.41% | 31.59% |
| All Indica | 795 | 46.79% | 53.21% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 55.76% | 44.24% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 210 | 34.76% | 65.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002136478 | A->G | INTERGENIC | None |