Detailed information of SNP:
|
SNP ID:
sf1002137353(Gbrowse)
Chromosome: chr10 Position: 2137353 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.75% | 30.25% |
| All Indica | 799 | 69.21% | 30.79% |
| All Japonica | 496 | 80.44% | 19.56% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 79.04% | 20.96% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002137353 | G->A | INTERGENIC | None |