Detailed information of SNP:
|
SNP ID:
sf1002207145(Gbrowse)
Chromosome: chr10 Position: 2207145 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.28% | 25.72% |
| All Indica | 796 | 95.98% | 4.02% |
| All Japonica | 497 | 37.02% | 62.98% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 37.91% | 62.09% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002207145 | T->C | INTERGENIC | None |