Detailed information of SNP:
|
SNP ID:
sf1002233089(Gbrowse)
Chromosome: chr10 Position: 2233089 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 85.42% | 14.58% |
| All Indica | 779 | 94.87% | 5.13% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 92.14% | 7.86% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002233089 | T->C | LOC_Os10g04674(LOC_Os10g04674.2) | INTRON |