Detailed information of SNP:
|
SNP ID:
sf1002247862(Gbrowse)
Chromosome: chr10 Position: 2247862 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 52.54% | 47.46% |
| All Indica | 797 | 77.04% | 22.96% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 65.78% | 34.22% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002247862 | C->A | INTERGENIC | None |