Detailed information of SNP:
|
SNP ID:
sf1002251224(Gbrowse)
Chromosome: chr10 Position: 2251224 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.34% | 48.66% |
| All Indica | 798 | 75.06% | 24.94% |
| All Japonica | 497 | 8.65% | 91.35% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 64.71% | 35.29% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002251224 | A->T | INTERGENIC | None |