Detailed information of SNP:
|
SNP ID:
sf1002252769(Gbrowse)
Chromosome: chr10 Position: 2252769 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 53.68% | 46.32% |
| All Indica | 795 | 78.99% | 21.01% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 65.95% | 34.05% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002252769 | C->T | INTERGENIC | None |