Detailed information of SNP:
|
SNP ID:
sf1002268262(Gbrowse)
Chromosome: chr10 Position: 2268262 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 79.64% | 20.36% |
| All Indica | 785 | 84.20% | 15.80% |
| All Japonica | 497 | 69.42% | 30.58% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 364 | 73.63% | 26.37% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002268262 | A->C | LOC_Os10g04740(LOC_Os10g04740.1) | INTRON |