Detailed information of SNP:
|
SNP ID:
sf1002269200(Gbrowse)
Chromosome: chr10 Position: 2269200 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 67.18% | 32.82% |
| All Indica | 707 | 69.02% | 30.98% |
| All Japonica | 489 | 67.69% | 32.31% |
| Aus | 60 | 56.67% | 43.33% |
| Indica I | 338 | 54.44% | 45.56% |
| Indica II | 188 | 86.70% | 13.30% |
| Indica Intermediate | 181 | 77.90% | 22.10% |
| Temperate Japonica | 333 | 60.96% | 39.04% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002269200 | G->A | LOC_Os10g04740(LOC_Os10g04740.1) | INTRON |