Detailed information of SNP:
|
SNP ID:
sf1002270550(Gbrowse)
Chromosome: chr10 Position: 2270550 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 69.16% | 30.84% |
| All Indica | 787 | 50.95% | 49.05% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 370 | 44.05% | 55.95% |
| Indica II | 209 | 58.37% | 41.63% |
| Indica Intermediate | 208 | 55.77% | 44.23% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002270550 | C->T | INTERGENIC | None |