Detailed information of SNP:
|
SNP ID:
sf1002270961(Gbrowse)
Chromosome: chr10 Position: 2270961 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 74.88% | 25.12% |
| All Indica | 789 | 92.27% | 7.73% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002270961 | G->A | INTERGENIC | None |