Detailed information of SNP:



SNP ID: sf1002286729(Gbrowse)

Chromosome: chr10

Position: 2286729
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 52.55% 47.45%
All Indica793 79.57% 20.43%
All Japonica496 7.86% 92.14%
Aus67 79.10% 20.90%
Indica I373 69.97% 30.03%
Indica II212 95.75% 4.25%
Indica Intermediate208 80.29% 19.71%
Temperate Japonica334 4.49% 95.51%
Tropical Japonica94 14.89% 85.11%
Japonica Intermediate68 14.71% 85.29%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 45.24% 54.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1002286729 T->C INTERGENIC None