Detailed information of SNP:
|
SNP ID:
sf1002286729(Gbrowse)
Chromosome: chr10 Position: 2286729 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 52.55% | 47.45% |
| All Indica | 793 | 79.57% | 20.43% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 69.97% | 30.03% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002286729 | T->C | INTERGENIC | None |