Detailed information of SNP:
|
SNP ID:
sf1002290289(Gbrowse)
Chromosome: chr10 Position: 2290289 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 75.92% | 24.08% |
| All Indica | 792 | 70.58% | 29.42% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 372 | 70.16% | 29.84% |
| Indica II | 211 | 65.88% | 34.12% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002290289 | T->C | LOC_Os10g04770(LOC_Os10g04770.1) | INTRON |