Detailed information of SNP:
|
SNP ID:
sf1002291412(Gbrowse)
Chromosome: chr10 Position: 2291412 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.65% | 24.35% |
| All Indica | 797 | 70.26% | 29.74% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 374 | 70.05% | 29.95% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002291412 | C->T | LOC_Os10g04770(LOC_Os10g04770.1) | Non-Synonymous SNP |