Detailed information of SNP:
|
SNP ID:
sf1002296063(Gbrowse)
Chromosome: chr10 Position: 2296063 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.84% | 43.16% |
| All Indica | 798 | 81.70% | 18.30% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 69.07% | 30.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002296063 | G->A | LOC_Os10g04780(LOC_Os10g04780.1) | UTR_3_PRIME |