Detailed information of SNP:
|
SNP ID:
sf1002296372(Gbrowse)
Chromosome: chr10 Position: 2296372 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 95.01% | 4.99% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 464 | 86.42% | 13.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 93.56% | 6.44% |
| Tropical Japonica | 71 | 46.48% | 53.52% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002296372 | G->A | LOC_Os10g04780(LOC_Os10g04780.1) | UTR_3_PRIME |