Detailed information of SNP:
|
SNP ID:
sf1002297514(Gbrowse)
Chromosome: chr10 Position: 2297514 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 75.30% | 24.70% |
| All Indica | 797 | 71.52% | 28.48% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002297514 | A->G | LOC_Os10g04780(LOC_Os10g04780.1) | INTRON |