Detailed information of SNP:
|
SNP ID:
sf1002298731(Gbrowse)
Chromosome: chr10 Position: 2298731 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 74.35% | 25.65% |
| All Indica | 799 | 70.21% | 29.79% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002298731 | G->A | LOC_Os10g04780(LOC_Os10g04780.1) | Non-Synonymous SNP |