Detailed information of SNP:
|
SNP ID:
sf1002307156(Gbrowse)
Chromosome: chr10 Position: 2307156 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 78.52% | 21.48% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 495 | 44.44% | 55.56% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 334 | 44.01% | 55.99% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002307156 | C->T | INTERGENIC | None |