Detailed information of SNP:
|
SNP ID:
sf1002315263(Gbrowse)
Chromosome: chr10 Position: 2315263 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.70% | 43.30% |
| All Indica | 799 | 48.56% | 51.44% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002315263 | C->T | INTERGENIC | None |