Detailed information of SNP:
|
SNP ID:
sf1002318912(Gbrowse)
Chromosome: chr10 Position: 2318912 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 86.78% | 13.22% |
| All Indica | 787 | 97.33% | 2.67% |
| All Japonica | 490 | 67.35% | 32.65% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 363 | 96.14% | 3.86% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 63.47% | 36.53% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 64 | 45.31% | 54.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002318912 | G->A | LOC_Os10g04810(LOC_Os10g04810.1) | INTRON |