Detailed information of SNP:
|
SNP ID:
sf1002323902(Gbrowse)
Chromosome: chr10 Position: 2323902 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 93.71% | 6.29% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 478 | 83.05% | 16.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 323 | 91.95% | 8.05% |
| Tropical Japonica | 88 | 43.18% | 56.82% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002323902 | C->T | INTERGENIC | None |