Detailed information of SNP:
|
SNP ID:
sf1002366972(Gbrowse)
Chromosome: chr10 Position: 2366972 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 65.70% | 34.30% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 492 | 13.01% | 86.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 6.02% | 93.98% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002366972 | C->G | LOC_Os10g04860(LOC_Os10g04860.1) | UTR_3_PRIME |