Detailed information of SNP:
|
SNP ID:
sf1002369648(Gbrowse)
Chromosome: chr10 Position: 2369648 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.27% | 35.73% |
| All Indica | 797 | 61.73% | 38.27% |
| All Japonica | 496 | 79.64% | 20.36% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 209 | 56.46% | 43.54% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002369648 | C->T | INTERGENIC | None |