Detailed information of SNP:
|
SNP ID:
sf1002384092(Gbrowse)
Chromosome: chr10 Position: 2384092 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 66.85% | 33.15% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002384092 | C->T | INTERGENIC | None |