Detailed information of SNP:
|
SNP ID:
sf1002388938(Gbrowse)
Chromosome: chr10 Position: 2388938 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 71.73% | 28.27% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 477 | 24.32% | 75.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 319 | 10.03% | 89.97% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002388938 | A->G | LOC_Os10g04900(LOC_Os10g04900.1) | INTRON |