Detailed information of SNP:
|
SNP ID:
sf1002405075(Gbrowse)
Chromosome: chr10 Position: 2405075 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 86.46% | 13.54% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 496 | 82.26% | 17.74% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002405075 | C->T | INTERGENIC | None |