Detailed information of SNP:
|
SNP ID:
sf1002433592(Gbrowse)
Chromosome: chr10 Position: 2433592 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.76% | 33.24% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 496 | 34.48% | 65.52% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 334 | 37.43% | 62.57% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002433592 | A->G | INTERGENIC | None |