Detailed information of SNP:
|
SNP ID:
sf1002595443(Gbrowse)
Chromosome: chr10 Position: 2595443 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 78.64% | 21.36% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 492 | 60.98% | 39.02% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 330 | 73.94% | 26.06% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002595443 | A->G | LOC_Os10g05250(LOC_Os10g05250.1) | UTR_3_PRIME |
| sf1002595443 | A->G | LOC_Os10g05259(LOC_Os10g05259.1) | INTRON |