Detailed information of SNP:
|
SNP ID:
sf1002636161(Gbrowse)
Chromosome: chr10 Position: 2636161 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 80.33% | 19.67% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 492 | 65.85% | 34.15% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 330 | 81.21% | 18.79% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002636161 | C->A | INTERGENIC | None |