Detailed information of SNP:
|
SNP ID:
sf1002655420(Gbrowse)
Chromosome: chr10 Position: 2655420 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 66.86% | 33.14% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 487 | 27.31% | 72.69% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 325 | 36.00% | 64.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002655420 | C->T | INTERGENIC | None |