Detailed information of SNP:
|
SNP ID:
sf1002658303(Gbrowse)
Chromosome: chr10 Position: 2658303 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 64.21% | 35.79% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 467 | 18.42% | 81.58% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 307 | 24.76% | 75.24% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002658303 | A->G | INTERGENIC | None |