Detailed information of SNP:
|
SNP ID:
sf1002737206(Gbrowse)
Chromosome: chr10 Position: 2737206 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.84% | 14.16% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002737206 | C->A | LOC_Os10g05530(LOC_Os10g05530.3) | INTRON |
| sf1002737206 | C->A | LOC_Os10g05530(LOC_Os10g05530.2) | INTRON |