Detailed information of SNP:
|
SNP ID:
sf1002755113(Gbrowse)
Chromosome: chr10 Position: 2755113 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 97.00% | 3.00% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 455 | 91.43% | 8.57% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 328 | 99.39% | 0.61% |
| Tropical Japonica | 66 | 46.97% | 53.03% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002755113 | C->T | INTERGENIC | None |