Detailed information of SNP:
|
SNP ID:
sf1002757340(Gbrowse)
Chromosome: chr10 Position: 2757340 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 88.18% | 11.82% |
| All Indica | 796 | 97.86% | 2.14% |
| All Japonica | 495 | 79.39% | 20.61% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002757340 | A->G | INTERGENIC | None |