Detailed information of SNP:
|
SNP ID:
sf1002766147(Gbrowse)
Chromosome: chr10 Position: 2766147 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 91.28% | 8.72% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 477 | 79.66% | 20.34% |
| Aus | 58 | 77.59% | 22.41% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 93.99% | 6.01% |
| Tropical Japonica | 80 | 17.50% | 82.50% |
| Japonica Intermediate | 64 | 82.81% | 17.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002766147 | G->A | INTERGENIC | None |