Detailed information of SNP:
|
SNP ID:
sf1002767023(Gbrowse)
Chromosome: chr10 Position: 2767023 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 72.16% | 27.84% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 25.81% | 74.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 7.19% | 92.81% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002767023 | C->T | INTERGENIC | None |