Detailed information of SNP:
|
SNP ID:
sf1002770224(Gbrowse)
Chromosome: chr10 Position: 2770224 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 66.74% | 33.26% |
| All Indica | 798 | 89.97% | 10.03% |
| All Japonica | 495 | 25.05% | 74.95% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 333 | 7.21% | 92.79% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002770224 | A->G | INTERGENIC | None |