Detailed information of SNP:
|
SNP ID:
sf1002770266(Gbrowse)
Chromosome: chr10 Position: 2770266 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 66.60% | 33.40% |
| All Indica | 792 | 91.04% | 8.96% |
| All Japonica | 495 | 25.66% | 74.34% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 333 | 6.91% | 93.09% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002770266 | A->G | INTERGENIC | None |