Detailed information of SNP:
|
SNP ID:
sf1002770955(Gbrowse)
Chromosome: chr10 Position: 2770955 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 92.59% | 7.41% |
| All Indica | 793 | 98.74% | 1.26% |
| All Japonica | 470 | 84.47% | 15.53% |
| Aus | 59 | 67.80% | 32.20% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 332 | 96.39% | 3.61% |
| Tropical Japonica | 75 | 28.00% | 72.00% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002770955 | G->A | INTERGENIC | None |