Detailed information of SNP:
|
SNP ID:
sf1002813927(Gbrowse)
Chromosome: chr10 Position: 2813927 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1308 | 84.86% | 15.14% |
| All Indica | 692 | 71.68% | 28.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 310 | 62.26% | 37.74% |
| Indica II | 193 | 80.31% | 19.69% |
| Indica Intermediate | 189 | 78.31% | 21.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002813927 | G->A | INTERGENIC | None |