Detailed information of SNP:
|
SNP ID:
sf1002823430(Gbrowse)
Chromosome: chr10 Position: 2823430 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 89.06% | 10.94% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002823430 | T->C | INTERGENIC | None |