Detailed information of SNP:
|
SNP ID:
sf1002823597(Gbrowse)
Chromosome: chr10 Position: 2823597 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.52% | 45.48% |
| All Indica | 797 | 87.95% | 12.05% |
| All Japonica | 496 | 10.48% | 89.52% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002823597 | A->G | INTERGENIC | None |