Detailed information of SNP:
|
SNP ID:
sf1002837352(Gbrowse)
Chromosome: chr10 Position: 2837352 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 86.49% | 13.51% |
| All Indica | 737 | 75.71% | 24.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 61.29% | 38.71% |
| Indica II | 198 | 88.38% | 11.62% |
| Indica Intermediate | 198 | 87.88% | 12.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002837352 | A->G | INTERGENIC | None |