Detailed information of SNP:
|
SNP ID:
sf1002841910(Gbrowse)
Chromosome: chr10 Position: 2841910 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1300 | 58.08% | 41.92% |
| All Indica | 760 | 93.82% | 6.18% |
| All Japonica | 452 | 1.11% | 98.89% |
| Aus | 39 | 12.82% | 87.18% |
| Indica I | 366 | 98.63% | 1.37% |
| Indica II | 190 | 81.58% | 18.42% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 319 | 0.31% | 99.69% |
| Tropical Japonica | 69 | 1.45% | 98.55% |
| Japonica Intermediate | 64 | 4.69% | 95.31% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002841910 | G->A | INTERGENIC | None |