Detailed information of SNP:
|
SNP ID:
sf1002856016(Gbrowse)
Chromosome: chr10 Position: 2856016 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 93.67% | 6.33% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 462 | 85.93% | 14.07% |
| Aus | 61 | 75.41% | 24.59% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 94.86% | 5.14% |
| Tropical Japonica | 70 | 41.43% | 58.57% |
| Japonica Intermediate | 61 | 88.52% | 11.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002856016 | G->A | INTERGENIC | None |