Detailed information of SNP:
|
SNP ID:
sf1002865075(Gbrowse)
Chromosome: chr10 Position: 2865075 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 74.47% | 25.53% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 29.64% | 70.36% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 11.38% | 88.62% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002865075 | A->T | LOC_Os10g05695(LOC_Os10g05695.1) | SNPs that introduce initiation codons |