Detailed information of SNP:
|
SNP ID:
sf1002868108(Gbrowse)
Chromosome: chr10 Position: 2868108 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 99.18% | 0.82% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 429 | 97.44% | 2.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 276 | 98.55% | 1.45% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002868108 | C->T | INTERGENIC | None |