Detailed information of SNP:
|
SNP ID:
sf1002879339(Gbrowse)
Chromosome: chr10 Position: 2879339 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 71.60% | 28.40% |
| All Indica | 753 | 73.84% | 26.16% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 351 | 81.48% | 18.52% |
| Indica II | 204 | 58.82% | 41.18% |
| Indica Intermediate | 198 | 75.76% | 24.24% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002879339 | T->C | LOC_Os10g05710(LOC_Os10g05710.1) | Non-Synonymous SNP |